PART ONE: Sequences of tRNA genes ********************************* Source Code tRNA genes =============================================================================== VIRUSES 000-029 ------------------------------------------------------------------------------- PHAGE T4 022 G, I, L, P, Q, R, S, T PHAGE T5 026 A, A, D, G, H, I, K, L, M, P, Q, S, S, T, V, X =============================================================================== ARCHEABACTERIA 030-109 ------------------------------------------------------------------------------- ARCHAEGLOBUS FULG. 034 A HALOBACTERIUM CUT. 038 A, C HALOBACTERIUM HAL. 042 A HALOBACTERIUM MAR. 044 L, S HALOBACTERIUM MED. 046 W HALOBACTERIUM VOL. 050 C, W METHANOBAC.FORMI. 058 A METHANOBAC.THERM. 062 A METHANOCOC.VANI. 066 A, D, E, F, H, I, K, L, N, P, Q, R, T, T, V, Y METHANOTHRIX SOEH. 067 A METHANOTHERM. FER. 068 A, D, E, H, I, K, L, M, N, P, S, T RUMINOBACTER AMYLO 070 E METHANOCOC.VOLTAE 074 D, K, P, T, Y METHANOSPIR. HUNG. 078 A SULFOLOBUS SOLFA. 086 F, G, L, S, V, X THERMOPLASMA ACID. 090 M THERMOCOCCUS CELER 094 A THERMOFIL. PENDENS 096 G, M THERMOPROT. TENAX 098 A, A, L, L, X =============================================================================== EUBACTERIA 110-239 ------------------------------------------------------------------------------- MYCOPLASMA CAPRIC. 114 A, C, D, E, F, G, H, I, I, K, K, L, L, M, N, P, Q, R, R, S, S, T, T, V, W, W, X, Y MYCOPLASMA MYCOID. 118 A, D, E, F, G, I, M, N, P, R, R, S, T, V, X MYCOPLASMA PNEUMO. 120 G, K, L, Q, Y MYCOPLASMA PG50 122 K, L ACHOLEPLASMA LAID. 123 A, C, D, E, F, G, H, I, K, K, L, L, L, M, M, N, Q, R, S, S, T, V, W SPIROPLASMA CITRI 125 S, W, W SPIROPLASMA MELIF. 126 A, C, D, F, I, M, P, R, S, X STREPTOMYCES COEL. 131 L STREPTOMYCES RIM. 134 E, Q, Q, X, X STREPTOMYCES LIV. 135 C, G, K, N, N, V, V STREPTOMYCES AMBO. 136 P MYCOBACT. TUBERC. 140 P LACTOBAC. BULG. 150 D, E, G, N, P, R, S, V LACTOBAC.DELBRUEC. 152 S BACILLUS SUBTILIS 154 A, A, A, A, C, D, E, F, F, G, G, G, H, H, I, I, I, K, L, L, L, L, L, M, M, N, N, P, Q, R, S, S, S, T, T, T, V, W, X, Y BACILLUS CIRCULANS 156 P BACILLUS SP. PS3 157 D, E, N, S, V THERMUS THERMOPHI. 158 G, G, T, T, Y THIOBACILLUS FERRO 162 A, I E.COLI 166 A, A, C, D, E, F, G, G, G, H, I, I, K, L, L, L, L, L, M, N, P, P, P, Q, Q, R, R, R, R, R, S, S, S, S, T, T, T, T, T, V, V, V, W, X, X, Y, Y, Z SALMONELLA TYPHI. 170 H, L, P, R PHOTOBACT. PHOSPH. 174 H, P PHOTOBAC. LEIOGNA. 175 L, M AEROMONAS HYDROPH. 178 H, L, P, R PSEUDOMONAS AER. 182 A, G, I, T, T, Y CAMPYLOBAC.JEJUNI 186 A, I CAULOBACTER CRES. 190 A, I RHIZOBIUM MELILOTI 194 L BORDETELLA PERTUS. 198 L HAEMOPHILUS INFLU. 200 G, K, L ANACYSTIS NIDULANS 210 A, I CYANOPHORA PARAD. 218 A, E, G, I, L, S PYLAIELLA LITTORA. 222 A, I =============================================================================== ORGANELLES ------------------------------------------------------------------------------- CHLOROPLASTS 240-359 ------------------------------------------------------------------------------- STREPTOCOCCUS PN. 224 A CYANOPHORA PARAD. 240 A, I PYLAIELLA LITTORA. 241 A, I CHLAMYDOMONAS REIN 244 A, C, D, E, G, I, R, W CHLAMYDOMO. MOEWU. 246 T CHLORELLA ELLIPSO. 248 A, I, R, S CUCUMIS SATIVUS 250 E EUGLENA GRACILIS 252 A, A, C, D, E, F, G, G, H, I, K, L, L, L, M, N, P, Q, R, S, S, T, V, W, X, Y CRYPTOMONAS SPEC. 254 A, I, R SPIROGYRA MAXIMA 255 I ANTITHAMNION SP. 257 A, I CYANIDIUM CALDAR. 258 A, I, K OLISTHODISCUS LUT. 259 A, I MARCHANTIA POLYM. 260 A, C, D, E, F, G, G, H, I, I, K, L, L, L, M, N, P, P, Q, R, R, R, S, S, S, T, T, V, V, W, X, Y CUSCUTA REFLEXA 261 M COLEOCHAETE ORBIC. 262 A, I HORDEUM VULGARE 264 G, G, M, S, T, V, X TRITICUM AESTIVUM 268 C, D, E, G, G, M, P, R, S, T, W, X, Y ORYZA SATIVA 270 A, C, D, E, F, G, G, H, I, I, L, L, L, M, M, N, P, Q, R, R, S, S, S, T, T, V, V, W, Y ZEA MAYS 272 A, C, F, H, I, L, L, M, N, P, R, S, S, S, T, V, V, W EPIFAGUS VIRGINIA. 274 L, N, R ARABIDOPSIS THAL. 276 I, M BRASSICA OLERACEA 280 L GLYCINE MAX 284 A, I, M, V MEDICAGO SATIVA 288 H NICOTIANA TABACUM 292 A, C, D, E, F, G, G, H, I, I, I, K, L, L, L, M, N, P, Q, R, R, S, S, S, T, T, V, V, W, X, Y NICOTIANA DEBNEYI 296 H OENOTHERA SP. 300 P, W GOSSYPIUM HIRSUTUM 302 H PELARGONIUM ZONALE 304 R PENNISETUM AMERICA 308 I PETUNIA HYBRIDA 312 H PISUM SATIVUM 320 D, E, G, H, K, L, N, P, R, R, S, T, V, W, X, Y PINUS THUNBERGII 322 I, K, Q PINUS CONTORTA 323 H, K SINAPIS ALBA 324 H, K, Q, S, V SPINACIA OLERACEA 328 A, C, D, E, H, I, I, L, M, R, S, S, T, T, V, Y SPIRODELA OLIGORH. 332 N, R, R VICIA FABA 336 E, F, H, L, L, T, Y SORGHUM BICOLOR 340 L =============================================================================== MITOCHONDRIA 360-599 ------------------------------------------------------------------------------- SINGLE CELL ORGANISMS AND FUNGI 360-419 CHLAMYDOMO. REINH. 364 M, Q, W PARAMECIUM PRIM. 372 X, Y PARAMECIUM TETRA. 376 W, Y PARAMECIUM AURELIA 377 F, W, Y TETRAHYMENA PYRIF. 380 E, F, H, L, W, X TETRAHYMENA THERM. 384 L, X, Y ASPERGILLUS NIDUL. 388 A, C, C, D, E, F, G, G, H, I, K, L, L, M, M, N, P, Q, R, S, S, T, V, W, X, Y NEUROSPORA CRASSA 392 A, C, M, R PODOSPORA ANSERINA 396 D, M, N, S, V, W SACCHAROMYCES CER. 400 A, A, C, D, E, F, G, H, I, K, L, M, N, P, Q, R, R, S, S, T, T, V, V, W, X, Y, Y SACCHAROMYCES EXI. 401 M, P PICHIA PIJPERI 402 L, M, M WILLIOPSIS MRAKII 403 K, L, P, Q, S SCHIZOSACCHA.POM. 404 G, H, L, P, Q KLUYVEROMYCES LAC. 405 C, K, L, Q CANDIDA PARAPSILO. 406 P HANSENULA WINGEI 407 C, E, G, L, P, Q, T, V, V, W TORULOPSIS GLAB. 408 A, C, D, E, F, G, H, I, K, L, M, N, P, Q, R, S, S, T, T, V, W, X, Y ------------------------------------------------------------------------------- PLANTS 420-459 ARABIDOPSIS THAL. 424 E, M, S, S, Y GLYCINE MAX 428 E, M, X SOLANUM LYCOPERS. 430 C LUPINUS LUTEUS 432 G, I, N, X BRASSICA NAPUS 434 K OENOTHERA SP. 436 F, G, H, L, S, S, S, W, X, Y PHASEOLUS VULGARIS 440 N, S, Y TRITICUM AESTIVUM 444 C, D, E, F, K, N, P, Q, Q, S, S, S, W, X, Y ZEA MAYS 448 C, D, E, H, K, M, M, P, S, S, W, X, Y MARCHANTIA POLYM. 450 A, C, D, E, F, G, G, H, I, K, L, L, L, M, M, N, P, Q, R, R, R, S, S, T, V, W, Y ------------------------------------------------------------------------------- ANIMALS 460-599 FASCIOLA HEPATICA 462 A, D, I, K, N, P, W MYTILUS EDULIS 470 A, C, D, E, F, G, H, I, K, L, L, M, M, N, P, Q, S, T, V, W, Y ARTEMIA SP. 472 E LOCUSTA MIGRATORIA 476 D, G, K, L, L, S AEDES ALBOPICTUS 480 A, E, F, G, L, N, R, V DROSOPHILA MELANO. 484 C, D, G, K, L, W, Y DROSOPHILA YAKUBA 488 A, C, D, E, F, G, H, I, K, L, N, P, Q, R, T, V, W, X, Y DROSOPHILA YAKUBA 492 L, S DROSOPHILA VIRILIS 496 I, Q, X PISASTER OCHRACEUS 498 A, C, D, E, G, L, L, N, P, Q, T, V, W, X, Y ASTERINA PECTINI. 500 A, C, D, G, H, L, L, M, N, P, Q, S, V, W, Y ASTERIAS FORBESII 502 A, C, D, G, L, L, N, V, W, X, Y PARACENTROTUS LIV. 504 A, C, D, E, F, F, G, H, I, K, L, L, N, P, Q, R, S, T, V, W, X, Y RAINBOW TROUT 506 F, P, T STRONGYLOCEN.PURP. 508 A, C, D, E, F, G, H, I, K, L, L, N, P, Q, R, S, T, V, W, X, Y ACIPENSER TRANSM. 509 P, T GADUS MORHUA 510 A, C, F, G, H, K, L, N, R, W, Y XENOPUS LAEVIS 512 A, C, D, E, F, F, G, H, I, K, L, L, P, Q, R, S, T, V, W, X, Y RANA CATESBEIANA 516 A, C, F, I, L, N, P, Q, T, W, X, Y CEPHALORHYN.COM. 520 F, P, T CHICKEN 522 A, C, D, E, F, G, H, I, K, L, L, M, N, P, Q, R, S, T, V, W, Y RAT 528 A, C, C, D, D, E, F, G, H, I, K, K, L, L, N, N, N, P, P, Q, Q, R, T, T, V, W, W, X, X, Y MOUSE 532 A, C, D, E, F, G, H, I, K, L, L, N, P, Q, R, T, V, W, X, Y BOVINE 536 A, C, D, E, F, G, H, I, K, L, L, N, P, Q, R, T, V, W, X, Y GREEN MONKEY 540 F MACACA FUSCATA 544 H, L MACACA MULATTA 548 H, L MACACA FASCICULA. 552 H, L MACACA SYLVANUS 556 H, L SAIMIRI SCIUREUS 560 H, L TARSIUS SYRICHTA 564 H, L LEMUR CATTA 568 H, L CHIMPANZEE 572 H, L GIBBON 576 H, L GORILLA 580 H, L ORANG UTAN 584 H, L HUMAN 588 A, C, D, E, F, G, H, I, K, L, L, N, P, Q, R, T, V, W, X, Y AEPYCEROS MELAMPUS 590 F, V BOSELAPHUS TRAGOC. 591 F, V CEPHALOPHUS MAXW. 592 F, V DAMALISCUS DORCAS 593 F, V GAZELLA THOMSONI 594 F, V KOBUS ELLIPSIPRYM. 595 F, V MADOQUA KIRKI 596 F, V ORYX GAZELLA 597 F, V TRAGELAPHUS IMBER. 598 F, V =============================================================================== EUKARYOTIC CYTOPLASM 600-999 ------------------------------------------------------------------------------- SINGLE CELL ORGANISMS AND FUNGI 600-669 TRYPANOSOMA BRUCEI 605 K, K, K, N, N, Q, Q, R, R, R, T, Y TETRAHYMENA PYRIF. 606 N, Q, S DICTYOSTELIUM DIS. 616 A, E, E, H, K, K, L, M, N, Q, R, R, S, S, S, T, T, V, V, W, W, Y NEUROSPORA CRASSA 620 F, L PHYTOPHTHORA PAR. 622 D PODOSPORA ANSERINA 624 S, S SACCHAROMYCES CER. 628 A, A, C, D, E, E, F, F, G, H, I, I, K, K, L, L, M, N, P, Q, Q, R, R, R, S, S, S, S, S, T, T, V, V, W, X, X, Y SCHIZOSACCHA.POM 632 A, D, E, E, F, H, I, K, R, R, S, S, S, V, X, X ------------------------------------------------------------------------------- PLANTS 670-749 ARABIDOPSIS THAL. 674 A, F, S, S, S, S, S, S, V, W, W, X, Y, Y, Y, Y GLYCINE MAX 690 D, M, X PHASEOLUS VULGARIS 698 L, P, P NICOTIANA RUSTICA 706 Y PETUNIA SP. 710 N SORGHUM BICOLOR 714 G ORYZA SATIVA 718 G TRITICUM AESTIVUM 720 Y TRITICUM VULGARE 724 S ------------------------------------------------------------------------------- ANIMALS 750-999 CAENORHABDI. ELEG. 756 D, K, L, P, R, W, X, Z BOMBYX MORI 768 A, A, E, G, K DROSOPHILA MELANO. 774 A, D, E, E, E, F, G, G, H, I, K, K, L, L, M, N, P, R, R, S, S, T, V, V, X, Y, Z DROSOPHILA SIMUL. 780 S XENOPUS LAEVIS 792 A, F, K, L, N, V, X, X, Y, Y, Y, Z CHICKEN 804 K, P, P, W, Z MOUSE 810 A, C, C, D, E, G, H, I, K, K, L, P, P, X RAT 916 D, D, E, E, E, F, G, G, K, L, L, L, P, P BOVINE 928 S, Z HUMAN 999 E, E, G, G, K, K, L, L, N, N, P, P, Q, Q, Q, S, S, S, S, T, T, V, V, V, V, V, V, X, X, Y, Y =============================================================================== PART TWO: tRNA Sequences ************************ Source Code tRNA =============================================================================== VIRUSES 000-029 ------------------------------------------------------------------------------- AVIAN ONCO.-VIRUS 010 M CHICKEN ASV/AMV/RS 014 W MOUSE M-MULV 018 P, P PHAGE T4 022 G, I, L, P, Q, R, S, T PHAGE T5 026 D, H, L, N, P, Q =============================================================================== ARCHAEBACTERIA 030-109 ------------------------------------------------------------------------------- HALOBACTERIUM CUT. 038 A, G, H, N, Q, R, S, T, V, V, V, X HALOBACTERIUM VOL. 050 A, A, A, C, D, E, E, F, G, G, G, G, H, I, I, K, K, L, L, L, L, L, M, N, P, P, P, Q, R, R, R, S, S, S, T, T, V, V, W, X, Y HALOCOCCUS MORRHUA 054 X METHANOBAC.THERM. 062 G, N SULFOLOBUS ACIDO. 082 X THERMOPLASMA ACID. 090 M, X =============================================================================== EUBACTERIA 110-239 ------------------------------------------------------------------------------- MYCOPLASMA CAPRIC. 114 A, C, D, E, F, G, H, I, I, K, K, L, L, L, M, N, P, Q, R, R, S, S, T, T, V, W, W, X, Y MYCOPLASMA MYCOID. 118 A, G, I, P, S, T, V, X SPIROPLASMA CITRI 125 W, W STREPTOMYCES GRIS. 130 X STREPTOMYCES COEL. 131 G STAPHYLOCOC. EPID. 138 G, G MYCOBAC. SMEG. 142 X BACILLUS STEARO. 146 F, L, V, Y BACILLUS SUBTILIS 154 A, F, G, K, K, L, M, P, R, S, S, S, T, V, W, X, Y, Y THERMUS THERMOPHI. 158 F, I, M, X, X E.COLI 166 A, A, A, C, D, E, E, E, F, G, G, G, H, I, I, I, K, L, L, L, M, N, Q, Q, R, R, R, R, R, S, S, S, S, S, T, T, V, V, V, W, X, X, Y, Y, Z SALMONELLA TYPHI. 170 G, G, H, L, P, P, P RHODOSPIRIL. RUB. 202 F, L AGMENELLUM QUADR. 206 F ANACYSTIS NIDULANS 210 L, L, X SYNECHOCYSTIS SP. 214 E =============================================================================== ORGANELLES ------------------------------------------------------------------------------- CHLOROPLASTS 240-359 ------------------------------------------------------------------------------- CHLAMYDOMONAS REIN 244 E EUGLENA GRACILIS 252 F CODIUM FRAGILE 253 G, K, M, R SCENEDESMUS OBLIQ. 256 M, X, Y HORDEUM VULGARE 264 E, Q TRITICUM AESTIVUM 268 E ZEA MAYS 272 I GLYCINE MAX 284 L, L, L PHASEOLUS VULGARIS 316 F, L, L, L, W, X SPINACIA OLERACEA 328 F, I, I, L, M, P, T, V, W, X =============================================================================== MITOCHONDRIA 360-599 ------------------------------------------------------------------------------- SINGLE CELL ORGANISMS AND FUNGI 360-419 TETRAHYMENA PYRIF. 380 F, Y TETRAHYMENA THERM. 384 W NEUROSPORA CRASSA 392 A, L, L, T, V, W, X, Y SACCHAROMYCES CER. 400 F, G, H, I, K, L, M, P, R, R, S, S, S, T, W, X, Y ------------------------------------------------------------------------------- PLANTS 420-459 SOLANUM TUBEROSUM 431 I, L LUPINUS LUTEUS 432 I PHASEOLUS VULGARIS 440 F, L, L, L, L, M, P, W, X, Y ------------------------------------------------------------------------------- ANIMALS 460-599 AEDES ALBOPICTUS 480 D, E, G, I, K, Q, R, V, X HAMSTER 524 D, K, R RAT 528 D, D, F, K, L, L, L, R, V, V, W BOVINE 536 E, G, I, K, L, L, R, T, V, W, X =============================================================================== EUKARYOTIC CYTOPLASM 600-999 ------------------------------------------------------------------------------- SINGLE CELL ORGANISMS AND FUNGI 600-669 EUGLENA GRACILIS 604 D, F TETRAHYMENA THERM. 608 Q, Q, Q, X SCENEDESMUS OBLIQ. 612 F, X, Y NEUROSPORA CRASSA 620 F, X SACCHAROMYCES CER. 628 A, C, D, E, F, F, G, G, H, H, I, K, K, L, L, L, M, N, P, P, R, R, R, S, S, S, T, T, V, V, V, W, X, Y SCHIZOSACCHA.POM 632 E, F, Y TORULOPSIS UTILIS 636 A, I, L, P, V, X, Y ------------------------------------------------------------------------------- PLANTS 670-749 HORDEUM VULGARE 678 E, E, F WHEAT GERM 682 F, G, K, M, R, W, X, Y, Y BRASSICA NAPUS 686 F LUPINUS LUTEUS 694 E, F, G, H, I, M, N, P, S, V, X, Y PHASEOLUS VULGARIS 698 L, L, L, L, X PISUM SATIVUM 702 F SPINACIA OLERACEA 704 S NICOTIANA RUSTICA 706 Y, Y SOLANUM TUBEROSUM 707 L ------------------------------------------------------------------------------- ANIMALS 750-999 CAENORHABDI. ELEG. 756 L ASTERINA AMURENSIS 762 X BOMBYX MORI 768 A, A, F, F, G, G DROSOPHILA MELANO. 774 E, F, H, K, K, S, S, S, V, V, V, X, Y EUPHAUSIA SPERBA 786 X XENOPUS LAEVIS 792 D, F, X SALMON LIVER 798 X CHICKEN 804 W MOUSE 810 E, F, F, F, I, K, K, M, Q, Q, R, R, V, X, Z RAT 916 D, D, E, K, K, K, L, L, N, N, Q, S, S, S, V, V, X RABBIT LIVER 922 D, F, K, K, K, M, V BOVINE 928 D, F, F, L, N, Q, R, R, R, S, T, W, Y, Z, Z CALF LIVER 934 F COW MAMMARY GLAND 940 L, L SHEEP LIVER 946 H, X HUMAN 999 A, A, E, F, G, G, H, L, M, N, N, Q, Q, S, V, X, Y, Y, Z =============================================================================== PART THREE: tRNA and tRNA gene sequences which differ from the conventional alignment *************************************************************************** Source Code tRNA/tRNA gene =============================================================================== MITOCHONDRIA 360-599 ------------------------------------------------------------------------------- SINGLE CELL ORGANISMS AND FUNGI 360-419 TRYPANOSOMA BRUCEI 368 A, A ------------------------------------------------------------------------------- ANIMALS 460-599 FASCIOLA HEPATICA 462 S ASCARIS SUUM 464 A, C, D, E, F, G, H, I, K, L, L, N, P, Q, R, S, T, V, W, X, Y, S, S CAENORHABDI.ELEG. 468 A, C, D, E, F, G, H, I, K, L, L, N, P, Q, R, T, V, W, X, Y, S, S MYTILUS EDULIS 470 S, R ARTEMIA SP. 472 F AEDES ALBOPICTUS 480 S, S DROSOPHILA YAKUBA 488 S ASTERINA PECTINI. 500 S PARACENTROTUS LIV. 504 S STRONGYLOCEN.PURP. 508 S GADUS MORHUA 510 S XENOPUS LAEVIS 512 S, N CHICKEN 522 S HAMSTER 524 S RAT 528 S, S, S MOUSE 532 S, S BOVINE 536 S, S, S, S, S MACACA FUSCATA 544 S MACACA MULATTA 548 S MACACA FASCICULA. 552 S MACACA SYLVANUS 556 S SAIMIRI SCIUREUS 560 S TARSIUS SYRICHTA 564 S LEMUR CATTA 568 S CHIMPANZEE 572 S GIBBON 576 S GORILLA 580 S ORANG UTAN 584 S HUMAN 588 S, S, S =============================================================================== EUKARYOTIC CYTOPLASM 600-999 ------------------------------------------------------------------------------- SINGLE CELL ORGANISMS AND FUNGI 600-669 TRYPANOSOMA BRUCEI 605 V ===============================================================================