16836 Reka Albert: Boolean modeling of genetic regulatory networks.
Springer LN Physics 650 (2004), 459-481.

16838 Reka Albert/Hans Othmer: The topology of the regulatory interactions predicts
the expression pattern of the segment polarity in Drosophila melanogaster.
J. Theor. Biol. 223 (2003), 1-18.

17953 Edward Allen/.../David John: Algebraic dependency models of protein signal
transduction networks from time-series data. J. Theor. Biol. 238 (2006), 317-330.

18857 Maria Avino Diaz a.o.: Finite models of gene expression using
finite fields, and error correction. Research proposal.
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16847 Maria Avino/Edward Green/Oscar Moreno: Applications of finite fields to
dynamical systems and reverse-engineering problems. Internet 2004, 6p.

20381 Edgar Delgado-Eckert: Reverse engineering time discrete finite
dynamical systems - a feasible undertaking?
Internet (arxiv 0706-3234) 2007, 21p.
An analysis of the Laubenbacher-Stigler algorithm.

29252 Alicia Dickenstein: Algebraic geometry tools in systems biology.
Notices AMS December 2020, 1706-1715.

19790 Elena Dimitrova/Abdul Salam Jarrah/Reinhard Laubenbacher/Brandilyn Stigler:
A Gröbner fan method for biochemical network modeling. Internet 2007, 5p.

22989 Elena Dimitrova/.../Franziska Hinkelmann/.../Reinhard Laubenbacher/...:
Parameter estimation for boolean models of biological networks.. Internet 2009, 19p.

16617 Daniel Dix: Some problems in mathematical biochemistry. Internet ca. 2002, 14p.

26025 Edgar Ferrer Moreno: Acceleration of finite field arithmetic with an application
to reverse engineering genetic networking. PhD Univ. Puerto 2008, 115p.

16827 Jeffrey Fox/Colin Hill: From topology to dynamics in biochemical networks.
Chaos 11/4 (2001), 809-815.

26659 Andrea Gobbi: Algebraic reconstruction of gene regulatory networks.
Tesi LS Univ. Trento ca. 2010, 100p.

27276 Elizabeth Gross/Heather Harrington/Zvi Rosen/Bernd Sturmfels: Case study
for the Wnt pathway. Arxiv 1502.03188 (2015), 24p.

23296 Franziska Hinkelmann: Algebraic theory for discrete models in systems biology.
PhD thesis Univ. Blacksburg 2011, 109p.

22096 Franziska Hinkelmann/.../Reinhard Laubenbacher: ADAM -
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algebra. Internet 2011, 22p.

21816 Franziska Hinkelmann/David Murrugarra/Abdul Salam Jarrah/
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based models of complex biological networks.
Internet 2010, 23p.

20325 Sui Huang: Gene expression profiling, genetic networks, and
cellular states - an integrating concept for tumorigenesis and drug discovery.
J. Mol. Med. 77 (1999), 469-480.

19788 Winfried Just/Brandilyn Stigler: Computing Gröbner bases of ideals
of few points in high dimensions. ACM Comm. Computer Algebra 40/3 (2006), 65-76.

Andreas Kriete/Roland Eils (ed.): Computational systems biology.
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16844 Micah Leamer/Edward Green: Polynomial models of time series over (Z/p)^n.
Internet 2003, 16p.

19037 Reinhard Laubenbacher: Algebraic models in systems biology.
Internet 2005, 8p.

19787 Reinhard Laubenbacher/Pedro Mendes: A discrete approach to top-down
modeling of biochemical networks. In Kriete/Eils 2005, 229-247.

16831 Reinhard Laubenbacher/Brandilyn Stigler: A computational algebra approach to
the reverse engineering of genetic regulatory networks.
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19879 Reinhard Laubenbacher/Bernd Sturmfels: Computer algebra in systems
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28641 Matthew Macauley/Andy Jenkins/Robin Davies: The regulation
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18828 Bud Mishra: Algebraic systems biology - theses and hypotheses.
Internet 2007, 14p.

22135 David Murrugarra/Reinhard Laubenbacher: Regulatory motifs
in molecular interaction networks. Internet 2011, 16p.

18825 Venkatesh Mysore/Bud Mishra: Algorithmic algebraic model checking IV -
characterization of metabolic networks. Internet 2007, 15p.

17565 Dirk Repsilber/Hans Lilijenström/Siv Andersson: Reverse engineering of
regulatory networks - simulation studies on a genetic algorithm approach for
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18721 L. Steggles/R. Banks/A. Wipat: Modelling and analysing genetic
networks - from boolean networks to Petri nets.
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19789 Brandilyn Stigler: Polynomial dynamical systems in systems biology.
Proc. Symp. Appl. Math. 2006, AMS 2007, 51-84.

25953 Bernd Sturmfels: Can biology lead to new theorems? Internet ca. 2007, 8p.

25701 Alan Veliz-Cuba/Abdul Salam Jarrah/Reinhard Laubenbacher: Polynomial algebra
of discrete models in systems biology. Bioinformatics 26/13 (2010), 1637-1643.

22175 Alan Veliz-Cuba/Reinhard Laubenbacher: The dynamics of
semilattice networks. Internet 2010, 9p.

22993 Paola Vera-Licona/.../Reinhard Laubenbacher: An optimization algorithm
for the inference of biological networks. Internet ca. 2008, 8p.